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Computing notes

Overview

Overview
Access to Windows compute resources
General access to Linux computing

How to access BioHPC Linux

General access rules
Requesting exclusive access to an entire node
Job scheduler on BioHPC

How to connect to BioHPC

SSH
VNC
VSCode

How to transfer data to and from BioHPC

Transferring data to and from BioHPC

Using SLURM

Quick start
Software
Stata example
MATLAB example
Julia example
SBATCH examples

Command reference

biohpc_res
srun
TMux
manage_slurm

Getting Help

Tips and Tricks
Getting help

Repository
Open issue

Index

By Lars Vilhuber

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